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Abstract Larval abundances of Atlantic bluefin tuna (ABT) in the Gulf of Mexico are currently utilized to inform future recruitment by providing a proxy for the spawning potential of western ABT stock. Inclusion of interannual variations in larval growth is a key advance needed to translate larval abundance to recruitment success. However, little is known about the drivers of growth variations during the first weeks of life. We sampled patches of western ABT larvae in 3–4 day Lagrangian experiments in May 2017 and 2018, and assessed age and growth rates from sagittal otoliths relative to size categories of zooplankton biomass and larval feeding behaviors from stomach contents. Growth rates were similar, on average, between patches (0.37 versus 0.39 mm d−1) but differed significantly through ontogeny and were correlated with a food limitation index, highlighting the importance of prey availability. Otolith increment widths were larger for postflexion stages in 2018, coincident with high feeding on preferred prey (mainly cladocerans) and presumably higher biomass of more favorable prey type. Faster growth reflected in the otolith microstructures may improve survival during the highly vulnerable larval stages of ABT, with direct implications for recruitment processes. 

Abstract The increasing use of image-based observing systems in marine ecosystems allows for more quantitative analysis of the ecological zonation of zooplankton. Developing methods that take advantage of these systems can provide an increasingly nuanced understanding of how morphometric characteristics (especially size) are related to distribution, abundance and ecosystem function via a wider application of allometric calculations of biogeochemical fluxes. Using MOCNESS sampling of zooplankton near the Bermuda Atlantic Time Series and a ZooSCAN/EcoTaxa pipeline, we apply a new taxonomically resolved biomass to biovolume dataset and a suite of R scripts that provide information about the relationships between zooplankter size, taxonomy, distribution, depth of migration, magnitude of migration and biogeochemical contributions (e.g. respiratory O2 consumption). The analysis pipeline provides a framework for quantitatively comparing and testing hypotheses about the distribution, migration patterns and biogeochemical impacts of mesozooplankton. Specifically, our code helps to visualize a size-based structure in the extent of vertical migration and allow for a quantification of the relative importance of non-migratory versus migratory organisms of various size classes. It additionally allows us to quantify the error associated with various methods of calculating active flux, with size-based analysis being the most important methodological choice, and taxonomic identification being the least. 

Abstract Molecular tools have changed the understanding of zooplankton biodiversity, speciation, adaptation, population genetics and global patterns of connectivity. However, the molecular resources needed to capitalize on these advances continue to be limited in comparison with those available for other eukaryotic plankton. This deficiency could be addressed through an Ocean Zooplankton Open ‘Omics Project (Ocean ZOOP) that would generate de novo assembled transcriptomes for hundreds of metazoan plankton species. A collection of comparable reference transcriptomes would generate a new framework for ecological and physiological studies. Defining species niches, identifying optimal habitats, assessing adaptive capacity and predicting changes in phenology are just a few examples of how such a resource could transform studies on zooplankton ecology.